FastQCFastQC Report
Wed 31 May 2023
EGAF00007953684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56742795
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA1504843326.520429598154266No Hit
AAGTTGAT1399051324.656016680179395No Hit
GGTCGAGC1393821724.563853437251375No Hit
TTAGATTG1252818922.078907110585583No Hit
CCCCCCCA2680860.47245822134774995No Hit
CCCACCAA1095410.19304829802620757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)