FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56610116
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1650008229.1468789783084No Hit
CAACCATC1613355728.499424025204256No Hit
AGCTGCGT1560343627.56298185292537No Hit
GTGGAGCA746923013.194161269692506No Hit
CACCCATC915590.16173611090992995No Hit
TCTATTAA603080.10653219647174014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)