FastQCFastQC Report
Wed 31 May 2023
EGAF00007953692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56180943
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1654321229.446305306765673No Hit
CAACCATC1571855827.978451696690104No Hit
AGCTGCGT1544681827.494764550320916No Hit
GTGGAGCA741854113.204728514435937No Hit
CACCCATC1164650.20730339111609428No Hit
TCTATTAA600680.10691881764960762No Hit
CAACCATA583270.10381990206180768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)