FastQCFastQC Report
Fri 31 Mar 2023
EGAF00007953718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12162989
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA436330.3587358337658613No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG401520.33011622389858286No Hit
GGGCCAGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA279120.22948306538795685No Hit
GGGCCTGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA257940.2120695825672456No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG187610.1542466247400207No Hit
GGGCTGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA177920.14627983302459618No Hit
GGGCCCGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA166360.13677559027637037No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT164860.13554234078481858No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG161870.13308406346499202No Hit
GGGCAGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA149240.12270010274612597No Hit
TGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGG128650.10577169805875843No Hit
GGGTCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA126800.10425069035251121No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)