FastQCFastQC Report
Tue 4 Apr 2023
EGAF00007953814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106282344
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG1420860.13368730369740434No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT1310750.12332716335273901No Hit
CTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTTCTCAG1249130.11752939886233596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)