FastQCFastQC Report
Tue 4 Apr 2023
EGAF00007953818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103787824
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT2804480.2702128141736549No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2366270.22799109845486307No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG1484480.1430302652842977No Hit
CTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTTCTCAG1238280.11930879290811608No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)