FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462869
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT42760.9238034951573773No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT39180.8464597974804967No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT26860.5802937764248631No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26330.5688434524671127No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24670.5329801736560452No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23200.5012217279619071No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21030.4543402128896081No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG20290.43835296811840935No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17310.3739719013370954No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17270.3731077259440576No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17150.3705151997649443No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG16480.35604026193156163No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG15850.34242949949121676No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14660.31672028154834303No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG13670.29533194057065826No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13210.28539392355072385No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12420.26832645953822787No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT12330.2663820649038929No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12290.26551788951085514No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT12270.2650858018143363No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11800.2549317409461424No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11680.2523392147670291No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11490.24823438165009973No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG11290.24391350468491085No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11250.24304932929187306No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10790.23311131227193874No Hit
GGAGCCCAGGCTGTCGAACGCTGGGTGCAGCAGAGCCAGACCTT10680.23073482994108485No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9830.2123711028390322No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9720.20999462050817833No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG9640.20826626972210283No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9370.20243308581909783No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA9210.19897638424694677No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8800.19011858646830962No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8740.18882232337875296No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8630.1864458410478991No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8570.18514957795834242No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8490.1834212271722669No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT8220.17758804326926192No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7890.17045859627670032No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7290.15749596538113375No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7220.15598365844331766No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6970.15058256223683159No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6850.1479900360577183No Hit
AGTGGTTTTGTGAACGATACGGACCTTCTGCGGCACGCCACGCA6660.14388520294078888No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC6530.1410766329134161No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6420.13870015058256224No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6290.13589158055518946No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT6090.13157070359000061No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA6000.12962630895566563No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5930.12811400201784953No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5890.12724982662481177No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5510.11904016039095294No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5440.11752785345313685No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5290.1142871957292452No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5250.11342302033620744No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4980.10758983643320248No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4970.10737379258494305No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4930.10650961719190527No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4870.10521335410234862No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG4860.10499731025408916No Hit
GTACTCCAGTCGGTGTTTCCGCCCTCTACGCGGCGAAGCGACCG4750.10262082792323529No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4700.10154060868193808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)