FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462869
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41980.9069520749931406No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT41310.8924771371597578No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT39840.8607186914656199No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30610.6613102195221542No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA27360.5910959688378353No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27320.5902317934447976No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC25930.560201698536735No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22920.49517250021064274No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG20440.44159362584230094No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC19210.4150202325063895No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18920.4087549609068657No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC17820.38499013759832695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17670.3817494798744353No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG16750.3618734458345666No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC16610.3588488319589344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15120.32665829856827744No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA14530.31391171152097025No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14320.309374790707522No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA14280.3085106153144842No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14020.3028934752597387No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13590.2936035897845827No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13250.28625809894376164No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12900.2786965642546811No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12620.27264733650341677No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT12150.2624932756352229No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12050.2603328371526285No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12040.26011679330436904No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT11940.25795635482177465No Hit
GCGTACGCACTGTCTTCTCAGCAGAAAGCAC11760.25406756555310467No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11620.2510429516774725No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG11320.2445616362296892No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10720.2315990053341226No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG10450.22576582143111765No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG10370.2240374706450421No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10040.21690802365248052No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9910.21409945362510777No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9660.2086983574186217No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC9650.20848231357036223No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9220.19919242809520618No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9000.19443946343349847No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8350.1803966132966347No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT8180.17672386787622416No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7790.1682981577941059No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7450.16095266695328483No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT7280.15727992153287432No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7130.15403926380898267No Hit
GCAAACCCGCTGCACGAAGAATTTCGTGCCC6990.15101464993335045No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6860.14820607990597773No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6190.13373114207259504No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6160.13308301052781674No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.12811400201784953No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5870.1268177389282929No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5570.12033642348050962No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG5420.11709576575661797No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5340.11536741497054243No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5180.11191071339839134No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5100.11018236261231579No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5040.10888609952275914No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5020.10845401182624026No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4670.10089247713715975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)