FastQCFastQC Report
Wed 31 May 2023
EGAF00007958377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412054
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC13530.3283550214292301No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12770.30991083692914034No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12520.30384367097516346No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10920.26501380886971126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10750.26088813602100697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10450.25360753687623466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9530.23128036616559966No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7890.19147975750751114No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7840.19026632431671575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6840.16599766050080814No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6470.15701825488892232No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5410.13129347124406024No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5370.13032272469142395No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4810.11673227295451566No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4470.10848092725710706No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4390.10653943415183448No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4380.10629674751367539No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4180.10144301475049386No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4140.10047226819785757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)