FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382941
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50291.313257133605438No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12800.3342551463541381No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11250.29377893722531667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9440.24651317043617682No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9410.24572975993690932No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9360.2444240757714635No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8600.22457767645668653No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7450.19454694065143194No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7240.18906306715655935No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6160.16086028918292897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.15380959468952138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4830.1261290903820693No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4670.12195090105264259No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4620.12064521688719672No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4490.11725043805703751No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4270.11150542772907575No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3960.10341018590331148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)