FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530887
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20020.37710473226882557No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14680.2765183551301878No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12370.233006270637631No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11960.22528334655020749No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10040.18911745814080963No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8670.1633115898486872No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7500.14127300159921038No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCGGGC6370.11998786935826268No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6350.11961114135399813No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6300.11866932134333673No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6100.11490204130069112No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5880.11075803325378093No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5720.10774420921966445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)