FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530887
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20060.3778581882773547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19580.3688167161750052No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13660.2573052269126952No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12390.23338299864189554No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11190.21077931838602187No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9700.18271308206831208No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9100.17141124194037527No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7920.14918428968876615No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7640.1439100976290623No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6880.129594433467009No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCA6840.12884097745847986No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6740.12695733743715706No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6710.12639224543076022No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6130.11546713330708797No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5980.11264167327510374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)