FastQCFastQC Report
Wed 31 May 2023
EGAF00007958384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529964
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18880.3562506132492018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14710.2775660233525296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12360.23322338875848173No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11930.22510963008808144No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10220.19284328746858279No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8370.15793525597965144No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6670.1258576054222551No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6600.12453676098753878No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6460.12189507211810614No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6290.1186873070623665No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6200.11698907850344552No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCGGGC6060.11434738963401288No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5510.10396932621838464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)