FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529964
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19600.36983644172056973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18900.3566279973734065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13020.24567706485723562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12800.2415258394909843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11350.21416549048614625No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9750.1839747605497732No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9670.18246522405295454No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7480.14114166245254395No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7150.134914824403167No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7040.13283921172004134No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6900.13019752285060873No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6730.1269897577948691No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCA6520.12302722449072012No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6440.12151768799390147No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5790.10925270395724992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)