FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405824
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21670.5339753193502602No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15260.3760250749093203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10750.2648931556536824No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10300.2538046049519003No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10190.25109407033590914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9170.2259600220785365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9060.22324948746254536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8300.20452215738842455No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7980.19663696577826842No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7950.19589772906481628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7550.18604123955212112No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.1835771171739473No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.18111299479577353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7040.17347421542343477No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT7020.17298139094780002No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5180.1276415391894023No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4960.12222046995741997No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC4720.11630657624980287No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4510.11113191925563792No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4490.11063909478000314No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4350.10718932345055986No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4270.10521802554802082No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4190.10324672764548179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)