FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480682
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37640.783054077331791No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC22720.47266175974968894No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20580.428141682026787No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18990.39506368035416345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18480.3844537552893597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17590.3659383958625453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17080.35532847079774155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11580.2409077102949559No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11280.23466657790389486No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11220.23341835142568268No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9960.20720559538322633No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9800.2038769914413271No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9740.2026287649631149No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9730.20242072721674623No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8510.17704012215976467No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8490.17662404666702727No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8230.17121506526144104No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8150.16955076329049143No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7950.1653900083631174No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7730.16081317794300598No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7620.15852476273295027No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7610.15831672498658156No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG6660.13855313908155495No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6660.13855313908155495No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6570.13668079936423666No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6370.13252004443686263No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6360.13231200669049392No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6170.1283592895094886No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5910.12295030810390237No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5710.11878955317652835No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5620.11691721345921005No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5570.11587702472736652No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5430.11296449627820472No Hit
GGCGAAGGTGTAGTTGGCTTCGCGGATGTTC5410.11254842078546731No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5270.10963589233630551No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5230.10880374135083071No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5190.10797159036535589No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5150.10713943937988109No Hit
TACGACGACTTCCATACCGATGAAGATAAAC4990.10381083543798188No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4980.10360279769161317No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4940.10277064670613836No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4890.10173045797429486No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA4820.10027419374971396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)