FastQCFastQC Report
Wed 31 May 2023
EGAF00007958390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477166
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27030.5664695305197771No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA23610.4947963601765424No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18730.3925258714996458No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18660.3910588767850182No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17410.3648625425952394No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16010.33552264830268713No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15350.3216909838504839No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11700.24519768801632974No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10300.21585779372377747No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10010.2097802441917488No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9060.1898710302075169No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9010.18882317683992572No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8680.18190734461382413No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7860.16472254938532924No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7510.15738757581219115No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6980.14628033011572492No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC6490.13601136711333162No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6470.13559222576629515No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6220.13035295892833942No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6150.1288859642137118No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6080.12741896949908418No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6050.12679025747852948No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5810.12176056131409194No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5430.11379687572039918No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5320.11149159831169864No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5290.11086288629114395No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT5280.11065331561762573No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5180.10855760888244344No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5060.10604276080022465No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5060.10604276080022465No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4940.10352791271800589No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4860.10185134732986006No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4840.1014322059828236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)