FastQCFastQC Report
Sun 21 May 2023
EGAF00007958393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486548
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37540.7715579963333525No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28800.5919251543527052No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26150.537459818969557No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24040.49409308023052195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17440.3584435656913604No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC15930.32740860100134006No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14900.3062390555505315No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14870.30562246684808075No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14470.2974012841487377No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13570.2789036230752156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13320.27376538388812616No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12980.26677737859368444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12650.25999490286672644No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12570.25835066632685777No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10930.22464381725955093No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10440.21457286845285561No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9840.20224109440384092No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9780.20100791699893947No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9490.19504755954191572No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9240.18990932035482624No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8780.18045496025058164No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7890.16216282874454319No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7630.15681905998997017No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6940.14263751983360326No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6650.1366771623765795No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5910.12146797438279472No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5850.12023479697789324No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5420.11139702557609937No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5140.10564219768655919No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5060.10399796114669056No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5020.10317584287675625No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5000.10276478374178909No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4990.10255925417430552No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4910.10091501763443689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)