FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549224
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45960.8368170364004486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12470.22704761627314174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9520.1733354696808588No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7030.12799877645550814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6990.1272704761627314No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.12672425094314888No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.11015541928247854No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5580.10159789084235211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)