FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553685
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44090.7963011459584421No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14570.2631460126245067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.17464803995051337No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.1287735806460352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7080.12787054010854548No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.12732871578605165No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.11360249961620777No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6080.1098097293587509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)