FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420214
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15580.3707634681376632No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14800.35220149733231165No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13760.32745220292517624No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13670.32531043706302026No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13030.31008010204324465No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC10560.251300527826298No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9250.22012593583269477No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8720.20751331464444306No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6480.15420714207522834No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6130.14587805261128853No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6040.14373628674913258No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5300.126126211882517No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4880.11613130452578925No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA4690.11160979881679335No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4590.1092300589699534No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4380.10423260529158954No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4360.10375665732222153No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4270.10161489146006558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)