FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35180.8371924781182921No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30100.7163016938988229No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15050.35815084694941146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14840.3531533932710476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13630.3243585411242843No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11550.2748599523100135No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC11020.2622473311217618No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8810.209655080506599No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.16182230958511618No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.1444502087031846No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5600.13326543142303682No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5460.1299337956374609No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5130.1220806541428891No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4960.1180350964032612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4950.1177971224185772No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4830.11494143460236926No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4780.1137515646789493No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4440.1056604491996935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)