FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402515
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46831.1634349030470914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33650.8359936896761612No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20500.5092977901444666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15450.3838366272064395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12860.31949119908574836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10630.26408953703588683No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10010.2486863843583469No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8790.21837695489609082No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8730.21688632721761922No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8540.21216600623579243No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8340.20719724730755376No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8210.20396755400419858No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7930.19701129150466443No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7230.17962063525582897No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6800.16893780356011578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6740.16744717588164415No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.16744717588164415No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6510.16173310311416966No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5850.14533619865098196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5670.14086431561556714No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5390.13390805311603293No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5260.13067835981267778No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5200.12918773213420617No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5180.1286908562413823No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5080.12620647677726296No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5000.12421897320596748No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5000.12421897320596748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4920.122231469634672No Hit
GGTTACTTCCAGTCCCTGCGTAAAGACTGGG4760.11825646249208105No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4220.10484081338583656No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4200.10434393749301268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)