FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374148
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19090.510225899911265No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17390.46478933470177575No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15170.4054545260164427No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11980.320194147770401No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8750.23386467387237134No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8510.22745009996044344No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7970.2130173086586057No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7860.21007729561563876No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7600.20312817387771687No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6950.1857553695329121No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6940.1854880956199151No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6790.18147898692496017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6780.18121171301196318No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6510.1739953173610443No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6450.1723916738830623No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6060.16196799127617947No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5760.1539497738862696No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5630.15047521301730865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5360.1432588173663898No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5240.1400515304104258No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5200.13898243475843783No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4840.12936057389054598No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4670.12481691736959705No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4600.12294599997861809No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4580.1224114521526241No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4450.11893689128366315No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4450.11893689128366315No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4390.11733324780568118No Hit
ATCAGCACCACGACCGTTCAGGCTCGGCAGTTTCGCGTTAACGA4060.10851320867678031No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4000.10690956519879832No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4000.10690956519879832No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT3970.10610774345980736No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG3850.1029004565038434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)