FastQCFastQC Report
Wed 31 May 2023
EGAF00007958409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374148
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62131.6605728214503352No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43061.1508814693650642No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29510.7887253172541348No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14080.37632166949977014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11240.3004158782086233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9560.255513860825128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8750.23386467387237134No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8230.21996643039652758No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7930.21194821300661773No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7710.2060681869206838No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7480.1999208869217529No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7160.19136812170584902No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6920.18495354779392112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.16784801736211338No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6190.16544255214514045No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6000.1603643477981975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5970.1595625260592065No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5800.15501886953825758No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5140.13737879128045588No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5060.1352405999764799No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4900.13096421736852798No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA4830.12909329997754898No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4740.12668783476057602No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4550.1216096304136331No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4500.12027326084864812No Hit
GGTTACTTCCAGTCCCTGCGTAAAGACTGGG4450.11893689128366315No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4410.11786779563167517No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4270.11412596084971723No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4200.11225504345873825No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4160.11118594780675027No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC3800.10156408693885843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)