FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392808
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18430.4691859636259954No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13080.33298710820553556No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10820.27545263843913564No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10770.27417975193987904No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10040.25559560905073214No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8820.22453717846887028No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8810.22428260116901894No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7800.19857029388403494No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7120.18125903749414474No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6650.16929390440113234No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6120.15580130750901203No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6110.1555467302091607No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5640.14358159711614835No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5570.14179955601718908No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5500.14001751491822975No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5500.14001751491822975No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5280.13441681432150057No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4980.12677949532596078No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4830.12296083582819088No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4600.11710555793161036No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4530.11532351683265106No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4520.11506893953279974No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4400.11201401193458382No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4380.11150485733488116No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4360.1109957027351785No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4230.10768619783711125No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4230.10768619783711125No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4080.10386753833934136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)