FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392808
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64311.637186615343883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18080.460275758131199No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13830.35208040569438503No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11430.2909818537300666No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10540.2683244740432985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10340.26323292804627196No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10210.2599234231482047No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8540.21740901407303315No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8390.21359035457526326No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8230.209517117777642No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6960.17718580069652348No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6380.16242031730514653No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6230.15860165780737664No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6130.15605588480886337No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6110.1555467302091607No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5840.1486731431131749No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5690.14485448361540498No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5670.14434532901570232No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5450.13874462841897311No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5230.13314392782224393No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4850.12346999042789353No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.12219710392863689No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4740.12066964012952892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4700.11965133093012363No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4530.11532351683265106No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4340.11048654813547586No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4270.10870450703651657No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4240.1079407751369626No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4240.1079407751369626No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4190.10666788863770596No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4180.10641331133785462No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4040.10284922913993606No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4000.10183091994053074No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3940.10030345614142279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)