FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526403
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47270.897981204514412No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32820.6234766899124815No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14710.27944369617954307No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11360.21580424123722697No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10850.20611584660421767No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10370.19699735753785597No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9540.18122997019393886No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8780.16679236250553284No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8500.16147324388348852No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8490.16128327536127263No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8010.15216478629491095No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7290.1384870526953684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7110.13506761929548272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6260.11892029490713389No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5940.11284130219622608No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.11189145958514675No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5850.11113158549628326No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.1109416169740674No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5740.1090419317519087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5460.1037228131298644No Hit

[OK]Adapter Content

Adapter graph