FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530459
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47730.8997867884228565No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34050.6418969232306361No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15180.2861672626913673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11250.21208048124360226No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10940.2062364857604452No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10210.19247481897752702No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9410.1773935403113153No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8990.16947586901155415No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8600.16212374566177595No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8420.1587304579618783No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7410.139690343645786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7260.13686260389587132No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7130.1344118961126119No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6620.12479758096290193No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.12423203301291899No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6190.11669139367981314No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6120.1153717817965196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5890.11103591417998375No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.10481488673017142No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.10462637074684378No Hit

[OK]Adapter Content

Adapter graph