FastQCFastQC Report
Wed 31 May 2023
EGAF00007958416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559635
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17140.30627105166760477No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16950.302875981666622No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14200.25373681059976594No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11020.19691406005700146No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8620.1540289653077452No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7800.1393765579350827No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7400.13222904214353998No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.11203731003243185No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6100.10899961582102621No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5980.10685536108356339No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5850.104532418451312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)