FastQCFastQC Report
Sun 21 May 2023
EGAF00007958417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559635
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37980.6786566244069796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18580.3320021085171585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17900.31985133167153595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.19637799637263575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10320.1844059074218017No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.18351246794785886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8690.1552797805712652No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7570.13526673635494563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6730.12025695319270596No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6240.11150124634806614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.10703404897835196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)