FastQCFastQC Report
Sun 21 May 2023
EGAF00007958418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503279
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12500.24837118178982234No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12480.24797378789895866No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11080.2201562155384985No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7680.15259925409166686No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7420.14743313351043855No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6560.13034519620329876No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5970.11862207642281916No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5460.1084885322057944No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5400.10729635053320324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)