FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503279
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14190.2819509655678063No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12940.2571138473888241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12710.25254381764389133No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.20406176295851802No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9340.18558294703335526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8300.16491846470844201No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8170.1623354044178279No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7810.155182314382281No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5970.11862207642281916No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5770.11464813751418199No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.11285986500529528No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5370.10670025969690769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)