FastQCFastQC Report
Sun 21 May 2023
EGAF00007958420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476323
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12210.25633866095065744No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9490.19923455302389342No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7890.16564390130226758No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7780.16333454399640582No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7510.15766612151838144No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7090.14884857544145463No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6920.1452795686960319No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6720.14108073723082867No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6430.13499243160628396No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5870.1232357035037149No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5370.11273862484070683No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5100.10707020236268247No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4930.10350119561725972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)