FastQCFastQC Report
Wed 31 May 2023
EGAF00007958421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476323
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16450.345353888012966No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13660.2867801890733809No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12650.26557609017410455No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12430.260957375562381No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8370.17572109681875536No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8210.17236203164659275No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7850.16480413500922692No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7680.16123512826380418No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7580.15913571253120257No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7210.15136787432057658No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5750.12071640462459297No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5660.11882693046525153No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5650.11861698889199135No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5130.10770002708246294No Hit
GTCCTGGTTGGCGACCTGGACGACGAACAGA4790.10056201359161746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)