FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458979
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11230.24467350358077386No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9060.1973946520429039No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8020.1747356632874271No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7560.1647134182609662No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7040.15338392388322777No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6810.1483728013699973No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6660.14510467799180354No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6470.14096505504609144No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6060.13203218447902845No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5480.11939544075001253No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5200.11329494377738415No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5150.11220556931798623No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT4650.10131182472400699No Hit
GTCTACACCTTCCGCAACGGCCAGCGCTTTAACGTTGCCATCGA4590.10000457537272947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)