FastQCFastQC Report
Wed 31 May 2023
EGAF00007958423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458979
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41890.9126779220835811No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16590.36145444562823137No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12590.2743044888763974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12180.2653716183093344No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11440.24924887631024512No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7880.1716854148011129No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7730.16841729142291914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7140.15556267280202363No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6860.14946217582939525No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6740.14684767712684021No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5660.12331718880384507No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5630.12266356412820631No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5130.11176981953422707No Hit
GTCCTGGTTGGCGACCTGGACGACGAACAGA4800.10457994810220077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)