FastQCFastQC Report
Sun 21 May 2023
EGAF00007958425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462241
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41420.8960693664127587No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17120.3703695691208699No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12770.2762628152846675No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12450.2693400196001653No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11780.2548454161357387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7900.17090651846114904No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7740.16744512061889794No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7620.1648490722372096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.1529505171544714No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6940.15013813140764232No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5560.12028357501822641No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5550.12006723765308573No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5160.11163008041259863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)