FastQCFastQC Report
Sun 21 May 2023
EGAF00007958426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575496
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9400.16333736463850312No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9000.1563868384836732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8470.14717739132852356No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7930.1377941810195032No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7200.12510947078693857No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6880.11954904986307463No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6180.10738562909212226No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6040.10495294493793181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)