FastQCFastQC Report
Sun 21 May 2023
EGAF00007958428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480902
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17860.3713854381973874No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16190.3366590282427605No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14800.30775501037633446No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG13320.276979509338701No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10750.2235382676719997No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10600.22041912905332062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9850.2048234359599253No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8200.17051291115445558No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6880.1430644913100798No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6620.13765798437103607No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5730.11915109523354031No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5600.11644784176401844No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG5350.11124927739955333No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5230.10875396650461008No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5160.10729836848255986No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5030.10459511501303799No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4910.10209980411809474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)