FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44230.9197300073611671No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33730.7013903040536326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17550.3649392183854507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14700.30567558463054845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14020.29153548955920333No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC13410.27885099250990847No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11180.2324797983788797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11100.23081625778225084No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9800.20378372308703227No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8000.1663540596628835No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6240.12975616653704913No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5770.11998286553185472No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5610.11665578433859705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.11561607146570405No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5200.10813013878087428No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5060.1052189427367738No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5040.10480305758761661No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4940.10272363184183056No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4870.10126803381978033No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4860.10106009124520174No Hit

[OK]Adapter Content

Adapter graph