FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415659
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21480.5167697559778569No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18350.44146764535352295No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17830.4289573905533141No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14490.34860306164428057No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13860.33344640679018134No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13800.3320029158516957No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10800.25982836892741407No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10690.25718196887352374No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9980.24010065943477704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9470.22783098645764915No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9240.2222976045267876No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9080.21844829535749258No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8810.2119525861343072No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8470.20377280414955531No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7990.1922248766416702No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7770.18693207653388957No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7670.18452625830308017No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7650.1840450946569183No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7310.17586531267216637No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7080.17033193074130476No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6340.15252887583331529No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6250.15036363942558684No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6180.14867956666402027No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5840.14049978467926832No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5480.13183883904835456No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4940.11884742060198385No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4830.1162010205480935No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4810.11571985690193164No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4690.11283287502496037No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4440.1068183294479369No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4440.1068183294479369No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4430.10657774762485595No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4320.10393134757096562No Hit
CGGCAGCTTCTCAGTCGGCAGTTTGGACAGGGTTTCGGAACGCT4210.10128494751707529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)