FastQCFastQC Report
Wed 31 May 2023
EGAF00007958431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415659
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42371.0193451843939383No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34920.8401117261986387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18230.43858066347655167No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17490.4207776085685623No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14240.34258851606725704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13650.3283941885054817No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12560.3021707697896593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11500.2766690965430798No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11150.2682487327352469No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10180.24491229589639585No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9960.2396194957886152No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9510.22879331374997292No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9340.22470342275759694No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8940.2150801498343594No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8740.21026851337274063No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8400.20208873138798872No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8380.2016075677418268No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8050.19366836758015585No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7600.18284218554151357No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7340.17658705814140918No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7090.17057251256438571No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.16215214875655284No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6270.15084480307174872No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5890.14170269379467304No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5500.13232000269451644No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5370.12919243899446423No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5000.12029091154046948No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4720.11355462049420317No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4580.11018647497107004No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4570.10994589314798911No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4540.10922414767874629No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4480.10778065674026063No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4280.10296902027864187No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4260.10248785663247999No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4180.10056320204783248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)