FastQCFastQC Report
Wed 31 May 2023
EGAF00007958434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467348
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC20980.44891601119508373No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG19400.415108227701841No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16930.3622568193294932No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15110.3233136763182896No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14850.31775037017383195No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14350.30705170451141334No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13770.29464125234300775No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12450.26639677499422276No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10980.2349426979467121No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10720.22937939180225445No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT9670.20691219391117538No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG9300.19899518132098565No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8360.1788816898756387No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT7930.16968083740595874No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7510.16069395824952712No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7030.1504232392136053No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6410.13715689379220625No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6120.13095166770800346No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5830.12474644162380068No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5000.10698665662418584No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA4920.10527487011819886No Hit

[OK]Adapter Content

Adapter graph