FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467348
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT40600.868731651788389No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT25360.5426363223978705No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23010.49235259378450325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC18710.4003440690877034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17100.36589436565471556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT16500.3530559668598133No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16170.34599484752261694No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14940.31967612999306727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12600.2696063746929483No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11450.24499944366938556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10530.22531389885053535No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10460.22381608565779676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG7980.1707507039722006No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7620.1630476646952592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7470.15983806499653364No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6990.1495673459606118No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6980.14935337264736342No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6860.14678569288838297No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6690.14314814656316066No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6110.13073769439475508No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6020.12881193457551973No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5150.11019625632291141No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG4880.10441897686520538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)