FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472287
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12320.26085833402147424No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10550.2233811220719605No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9250.1958554861768374No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7540.15964868819171393No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC7320.15499050365561617No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG7010.148426698172933No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6740.14270983533317666No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6370.13487561588610314No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6310.13360520192171288No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6040.12788833908195651No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6020.1274648677604931No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5890.12471230417098078No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG5710.1209010622778099No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5630.11920717699195615No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5630.11920717699195615No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5580.11814849868829758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)