FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472287
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21870.46306589002026316No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14820.3137922492044033No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12550.2657282542183037No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11840.2506950223063519No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG10250.217029052250009No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9870.20898309714220378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8240.17447018444293408No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7780.1647303440492751No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7340.15541397497707962No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA7260.1537200896912259No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7220.15287314704829902No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7040.14906190515512813No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6900.1460976059048841No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT6430.13614602985049346No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6150.1302174313500054No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5600.11857197000976101No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5540.11730155604537072No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5480.1160311420809804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5450.11539593509878526No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4820.10205658847268716No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4750.10057443884756515No Hit

[OK]Adapter Content

Adapter graph