FastQCFastQC Report
Wed 31 May 2023
EGAF00007958438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463238
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11640.2512747227127308No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11320.2443668265556798No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10400.22450662510415811No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7010.15132610019039888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6180.1334087445330478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)