FastQCFastQC Report
Sun 21 May 2023
EGAF00007958440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463560
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11860.25584606091983775No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11780.2541202864785572No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10060.21701613599102598No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7330.15812408318232807No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6840.14755371472948484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)