FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463349
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG21880.47221424887072166No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17220.3716421099430451No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16220.3500601058813119No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15500.33452106295686407No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12620.27236489125907254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10670.23027998333869287No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9820.21193527988621966No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9720.20977707948004634No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8890.19186401610880782No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8250.1780515335092986No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7460.1610017503005294No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7450.16078593025991209No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6980.1506423883508975No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6710.14481524725422953No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6680.14416778713237755No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6150.13272932497965897No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5770.12452816343620036No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5580.12042758266447107No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5310.11460044156780311No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5210.11244224116162978No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5020.10834166038990048No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4670.10078795896829387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)